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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15216378_15216809_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
15216378 - 15216809
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCCGCGTCT
5'SS Class:
weak_major
3'SS Sequence:
TCTGCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCGCAG
U12 Branch Point Sequence:
GGTGGCTGAGGC
Flanking Amino Acid:
SKKTSHYRGEVRTLFVSGLP
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.7
0.02
1.3
52.5
38.8
Major BPS
43.5
-0.4
1.7
53.3
44.2
Major PPT
82.8
0.74
0.8
76.8
31.8
Minor 5ss
30.3
-2.3
4.4
47.4
42.7
Minor BPS
37.4
-0.9
2.2
44.59
43.2

Associated Gene:

Gene:
RBPMS
Ensembl Gene ID:
ENSAPLG00000002808
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002835
15214773 - 15216968
2196