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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15219725_15219831_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15219725 - 15219831
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CACTTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
CGAGCCTTAACT
Flanking Amino Acid:
LRRVQTERPQPQTLQLDFLM
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
71.2
34.2
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
81.3
0.7
0.8
72.6
37.2
Minor 5ss
27.1
-2.6
3.2
35
41.6
Minor BPS
70.7
0.73
1.5
77.58
44.5

Associated Gene:

Gene:
DCTN6
Ensembl Gene ID:
ENSAPLG00000002813
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002852
15219626 - 15221146
1521