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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15230985_15231951_R

Intron Information:

Intron Rank:
72
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15230985 - 15231951
Intron Length:
967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTACT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGCAAA
U12 Branch Point Sequence:
GCTTCCTGTATG
Flanking Amino Acid:
FTLKVDALYKVEAGHQWYLQ
Intron Amino Acid Position:
3795

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
84.6
33
Major BPS
47.9
-0.1
1.3
54.7
39
Major PPT
80.1
0.68
0.7
74.8
27.4
Minor 5ss
37.3
-1.4
3
52.4
44.2
Minor BPS
49.8
-0.1
1.9
56.84
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002906
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002994
15228441 - 15375565
147125