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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15236054_15237762_R

Intron Information:

Intron Rank:
65
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15236054 - 15237762
Intron Length:
1709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTTTATTGACA
Flanking Amino Acid:
CGGSVTADFQVRDSAQSFLT
Intron Amino Acid Position:
3443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
68.5
39.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
77
0.61
1
73
41.3
Minor 5ss
31.9
-2.1
3
38.5
46.6
Minor BPS
65.3
0.48
1.6
76.12
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002906
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002994
15228441 - 15375565
147125