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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15240744_15241471_R

Intron Information:

Intron Rank:
60
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15240744 - 15241471
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
TTCTCTTGCATT
Flanking Amino Acid:
PKSRVLKFSPGVDHIIFKVE
Intron Amino Acid Position:
3085

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
70.2
40.4
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
85
0.79
0.7
79.9
25.5
Minor 5ss
30.3
-2.3
3.7
46.8
48.5
Minor BPS
54
0.21
1.9
76.06
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002906
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002994
15228441 - 15375565
147125