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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15243715_15244100_R

Intron Information:

Intron Rank:
56
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15243715 - 15244100
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGACC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
CTGTCTTTAAAA
Flanking Amino Acid:
IEFRPGKTEEFCTLTILDDA
Intron Amino Acid Position:
2848

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.6
33.8
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
77.7
0.62
0.8
70.3
36.4
Minor 5ss
28.1
-2.5
3
34.6
41.4
Minor BPS
68.9
0.59
1.4
72.11
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002906
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002994
15228441 - 15375565
147125