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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15244262_15244558_R

Intron Information:

Intron Rank:
55
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
15244262 - 15244558
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
ATGGGTGATGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTGTGTGCAATG
Flanking Amino Acid:
NATFAVSEAAGNIEIPVLRQ
Intron Amino Acid Position:
2794

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.6
37.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
59
0.2
1.1
51.1
46.7
Minor 5ss
28.5
-2.5
3.1
39.7
45.9
Minor BPS
40.8
-0.8
2.4
50.51
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002906
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002994
15228441 - 15375565
147125