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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15245744_15247011_R

Intron Information:

Intron Rank:
53
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15245744 - 15247011
Intron Length:
1268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTGG
5'SS Class:
major
3'SS Sequence:
TTCTGCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCAGAG
U12 Branch Point Sequence:
CAGTCCAGAGGG
Flanking Amino Acid:
GQDYVEYAGQVQFEEREDTK
Intron Amino Acid Position:
2597

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
60.6
46.7
Major BPS
45.1
-0.3
1.5
42.6
40.5
Major PPT
83.1
0.75
0.8
77
31.7
Minor 5ss
41.9
-0.9
3.2
55.4
48.8
Minor BPS
37.8
-1
2
38.33
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002906
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002994
15228441 - 15375565
147125