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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15252375_15252876_R

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15252375 - 15252876
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGCAGG
5'SS Class:
major
3'SS Sequence:
TCTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCCCAT
U12 Branch Point Sequence:
TTTTCCCCTACT
Flanking Amino Acid:
LGHLEHAASPGTRISSFSQA
Intron Amino Acid Position:
2236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.2
64.8
46.6
Major BPS
49.3
-0
1.3
58.2
40.4
Major PPT
94.4
1
0.6
87.9
29.4
Minor 5ss
35.1
-1.7
2.7
40.9
45
Minor BPS
56.4
0.28
2.2
85.93
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002906
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002994
15228441 - 15375565
147125