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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15253057_15253480_R

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15253057 - 15253480
Intron Length:
424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATTAT
5'SS Class:
strong_major
3'SS Sequence:
TTAACCCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TTGCATTTAACC
Flanking Amino Acid:
MDQVFYIRILEDRFPPSITA
Intron Amino Acid Position:
2176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.4
23.9
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
78
0.63
0.9
74.2
36.2
Minor 5ss
41.2
-1
3
57.8
46.8
Minor BPS
65.3
0.46
1.5
72.8
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002906
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002994
15228441 - 15375565
147125