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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15254112_15254871_R

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15254112 - 15254871
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGGGGA
5'SS Class:
major
3'SS Sequence:
TTCTCTGGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TGTTTCTGAGCT
Flanking Amino Acid:
AVNRGLQLPAGSAAHLTAQH
Intron Amino Acid Position:
2073

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
58.4
40.5
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
71.5
0.48
1
64.6
41.3
Minor 5ss
34.8
-1.7
3.5
43.4
46.2
Minor BPS
62.6
0.47
1.7
81.65
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002906
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002994
15228441 - 15375565
147125