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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15261984_15262752_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15261984 - 15262752
Intron Length:
769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCCCGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTAACCATAATT
Flanking Amino Acid:
LREIIAFSFAGLPESVNFRF
Intron Amino Acid Position:
1541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.5
0.53
1
66.8
40.4
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
59.6
0.38
1.7
74.75
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002906
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002994
15228441 - 15375565
147125