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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15262891_15263415_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15262891 - 15263415
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTTCTATTAATA
Flanking Amino Acid:
NVTVPLLPGQGIVEHRDRPL
Intron Amino Acid Position:
1495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.1
1.16
0.7
91.7
21.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
81.5
0.71
0.8
77.3
31.5
Minor 5ss
25.9
-2.8
4.1
39.9
46.1
Minor BPS
59.7
0.3
1.6
69.42
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002906
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002994
15228441 - 15375565
147125