Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15263531_15266523_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

15263531 - 15266523

Intron Length:

2993

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGTGTG

5'SS Class:

major

3'SS Sequence:

TGTGTTTATCGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

ATGTGTTTATCG

Flanking Amino Acid:

LSLGSSLHMAVLEDRVTVIE

Intron Amino Acid Position:

1457

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.7

0.58

1.1

69.5

41.3

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

55.7

0.13

1.8

62.3

47.7

Minor 5ss

39.2

-1.2

3.4

59.1

45.3

Minor BPS

48.5

-0.2

2.1

57.01

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002906

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002994

15228441 - 15375565

147125