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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15291466_15297867_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15291466 - 15297867
Intron Length:
6402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTTAT
U12 Branch Point Sequence:
TTTCCCTTATTC
Flanking Amino Acid:
QYLNMVGYCVDCHPLCRQCV
Intron Amino Acid Position:
789

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
77.9
38.6
Major BPS
66.5
0.41
1.1
57.2
40.1
Major PPT
80
0.68
0.8
77.3
31.5
Minor 5ss
34.6
-1.7
2.7
34.2
41.4
Minor BPS
70.8
0.63
1.5
79.93
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002906
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002994
15228441 - 15375565
147125