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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15300191_15302710_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15300191 - 15302710
Intron Length:
2520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTAGA
5'SS Class:
major
3'SS Sequence:
CCCTTCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCTAT
U12 Branch Point Sequence:
TTCTCTCTATCT
Flanking Amino Acid:
FYLDVTGVCKQCHSSCAGCM
Intron Amino Acid Position:
694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.3
74.1
38.4
Major BPS
61.2
0.28
1.4
60.7
45.4
Major PPT
79
0.65
0.7
72.8
25.4
Minor 5ss
31
-2.2
2.6
32.5
35
Minor BPS
57.8
0.32
2
80.25
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002906
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002994
15228441 - 15375565
147125