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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15303903_15304333_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15303903 - 15304333
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTATCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
CTTTCTTTATCA
Flanking Amino Acid:
YFPGSHGRCRACHDSCSTCE
Intron Amino Acid Position:
589

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
74.6
28.6
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
85
0.79
0.8
85.3
27.7
Minor 5ss
25.3
-2.8
3.2
31.7
42.9
Minor BPS
70.7
0.65
1.6
78.76
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002906
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002994
15228441 - 15375565
147125