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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15304475_15306380_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15304475 - 15306380
Intron Length:
1906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAATGCC
5'SS Class:
major
3'SS Sequence:
CCTTCTTTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTCATTAACA
Flanking Amino Acid:
GFYLKDGVCSVCDQACETCY
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
68.3
35
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
78.5
0.64
0.9
75.8
32.6
Minor 5ss
33.4
-1.9
3.2
41.4
40.3
Minor BPS
78.2
0.88
1.5
85.92
32.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002906
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002994
15228441 - 15375565
147125