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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15312882_15313198_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
15312882 - 15313198
Intron Length:
317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACCTCT
5'SS Class:
weak_major
3'SS Sequence:
TTTCTCCTGGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTCTCCTGGAAG
Flanking Amino Acid:
GFYQDGGACLACNETCAACT
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.2
72.3
40.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
68.7
0.42
1.1
72
32.9
Minor 5ss
57.2
0.24
2.5
74.8
41.2
Minor BPS
56.8
0.07
1.8
64.64
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002906
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002994
15228441 - 15375565
147125