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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15316329_15317740_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15316329 - 15317740
Intron Length:
1412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TCACCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TCATCCTAACCC
Flanking Amino Acid:
YCVYKEHRKADGEKWAEGPC
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
78.6
35.6
Major BPS
72
0.55
1
71.8
31.4
Major PPT
81.6
0.71
0.8
76.2
32
Minor 5ss
43.2
-0.7
2.9
64.8
39.3
Minor BPS
54.7
0.13
2
66.7
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002906
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002994
15228441 - 15375565
147125