About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15325482_15326066_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15325482 - 15326066
Intron Length:
585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TATTATCTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTATCT
Flanking Amino Acid:
ACCPTCVGLGEPCYFDGRLF
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
81.7
31.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
76.2
0.59
0.8
74.3
35.8
Minor 5ss
35.3
-1.7
2.9
46.6
41.8
Minor BPS
60.7
0.41
1.9
81.81
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002906
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002994
15228441 - 15375565
147125