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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15331184_15372275_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15331184 - 15372275
Intron Length:
41092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TAACTTAGAACT
Flanking Amino Acid:
ACVYQGLVFENNTIWKPDSC
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
77.9
38.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
86.9
0.83
0.8
81.4
35.2
Minor 5ss
33.7
-1.9
3
41.1
45.5
Minor BPS
47.5
-0.1
1.7
65.44
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002906
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002994
15228441 - 15375565
147125