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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15402670_15402741_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15402670 - 15402741
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGCTAA
5'SS Class:
major
3'SS Sequence:
AATGTGTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTATATTAATG
Flanking Amino Acid:
RPSYNVEEAVDTALQKKKKV
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1
65.6
36.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
68.7
0.42
1
58.9
46.4
Minor 5ss
49.4
-0
2.5
60.6
46.3
Minor BPS
55.4
0.03
1.7
61.86
40

Associated Gene:

Gene:
MRPL1
Ensembl Gene ID:
ENSAPLG00000003428
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003504
15387705 - 15404538
16834