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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15426313_15426781_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15426313 - 15426781
Intron Length:
469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTCGA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAC
U12 Branch Point Sequence:
TGGTTTGTCACT
Flanking Amino Acid:
KSHWAELEISGRVRSLSTSL
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
65
42.7
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
92.6
0.96
0.5
92.8
16.9
Minor 5ss
27.7
-2.6
2.7
23.9
36.9
Minor BPS
45.6
-0.2
2.3
67.24
44.2

Associated Gene:

Gene:
CNOT6L
Ensembl Gene ID:
ENSAPLG00000003448
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003532
15415368 - 15435338
19971