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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15426969_15427510_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15426969 - 15427510
Intron Length:
542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
GCATTTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
AACTCATCAAAA
Flanking Amino Acid:
PAELGNMVSLRELLLNNNLL
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
71.2
34.5
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
72
0.5
1
65.5
40.8
Minor 5ss
24.3
-3
3.1
29.7
43.1
Minor BPS
47.8
-0.1
1.9
58.37
40.3

Associated Gene:

Gene:
CNOT6L
Ensembl Gene ID:
ENSAPLG00000003448
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003532
15415368 - 15435338
19971