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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15428133_15429083_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15428133 - 15429083
Intron Length:
951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACAGAC
5'SS Class:
major
3'SS Sequence:
CTTTCTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCACTGTTATGT
Flanking Amino Acid:
LLNYMLDNLAVHPEQLPPRP
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
65.6
34.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
88.9
0.88
0.6
88.5
21.1
Minor 5ss
30.8
-2.2
3.3
40.8
45.7
Minor BPS
40.7
-0.6
2.3
57.15
45.6

Associated Gene:

Gene:
CNOT6L
Ensembl Gene ID:
ENSAPLG00000003448
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003532
15415368 - 15435338
19971