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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15432347_15433688_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15432347 - 15433688
Intron Length:
1342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCACTGAAAA
Flanking Amino Acid:
LEVHKELFGASIKSLHVDKQ
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.6
0.62
0.9
70.9
40
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
56.7
0.21
1.8
72.94
37.7

Associated Gene:

Gene:
CNOT6L
Ensembl Gene ID:
ENSAPLG00000003448
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003532
15415368 - 15435338
19971