About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15441988_15442480_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15441988 - 15442480
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTGGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTGAG
U12 Branch Point Sequence:
GAGCCCGGGACA
Flanking Amino Acid:
LLLSSLVPGDGLSLESLLTN
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.8
32
Major BPS
46.8
-0.2
1.6
43
41.8
Major PPT
63.5
0.3
1.1
60.7
44.7
Minor 5ss
29.4
-2.4
3.2
40.8
45.4
Minor BPS
43
-0.5
2.1
50.45
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001305
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039294
15438617 - 15442544
3928