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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15442015_15442396_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
15442015 - 15442396
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAA|GCGTTGAAC
5'SS Class:
weak_major
3'SS Sequence:
GCTGGGGACTGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGGGGAC
U12 Branch Point Sequence:
CCCCCCCCAGCT
Flanking Amino Acid:
AFGFLLLLLATRDMGCCGSG
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.1
0.03
1.3
53.4
41.3
Major BPS
42.6
-0.4
1.5
34.5
43.7
Major PPT
42.1
-0.4
1.7
38.5
43.7
Minor 5ss
24.7
-2.9
3.9
33.2
36.3
Minor BPS
41.4
-0.5
2
54.27
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001305
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001294
15440511 - 15442457
1947