About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15443555_15443812_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15443555 - 15443812
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
TGTGCCCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGCGAG
U12 Branch Point Sequence:
TGGTGTGCGAGC
Flanking Amino Acid:
LLATHRPGGAALLEANGNLS
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.2
Major BPS
36.9
-0.8
1.7
29.6
44.5
Major PPT
73.4
0.53
0.9
62.9
39.6
Minor 5ss
25.6
-2.8
3
30.5
42.8
Minor BPS
33.1
-1.3
2.4
41.53
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003704
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003779
15443064 - 15443876
813