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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15445526_15446095_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15445526 - 15446095
Intron Length:
570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATAAA
U12 Branch Point Sequence:
CGCTCATAAACA
Flanking Amino Acid:
VGSTCRRTEIIIKLRTSSKV
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
80.9
31.3
Major BPS
66
0.4
1.1
66.5
36.3
Major PPT
79.2
0.66
0.9
75.9
38
Minor 5ss
37.8
-1.4
3.3
55.2
42.1
Minor BPS
49.6
-0
2
60.92
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003708
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003780
15445438 - 15446523
1086