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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15474506_15474984_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15474506 - 15474984
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTAAA
5'SS Class:
major
3'SS Sequence:
CTCTTCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TCTTCCCTACTC
Flanking Amino Acid:
PEGGCFNESESEDSCEDMSS
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.2
75.3
36.2
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
85
0.79
0.7
76.7
32
Minor 5ss
30
-2.3
2.7
33.5
41.8
Minor BPS
56.1
0.17
2
70.63
41.3

Associated Gene:

Gene:
CCNG2
Ensembl Gene ID:
ENSAPLG00000011007
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011471
15472610 - 15478732
6123