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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15476243_15476321_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15476243 - 15476321
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
GTATGCTGAGCG
Flanking Amino Acid:
NCRLVFSKAKPSVLALCLLT
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
71.7
40.1
Major BPS
84
0.85
0.9
75
39.9
Major PPT
82
0.72
0.8
74.3
36.5
Minor 5ss
35.3
-1.7
2.9
41.5
39
Minor BPS
45.8
-0.4
2.1
54.33
45.9

Associated Gene:

Gene:
CCNG2
Ensembl Gene ID:
ENSAPLG00000011007
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011471
15472610 - 15478732
6123