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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15476401_15476574_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15476401 - 15476574
Intron Length:
174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
GGGTGTCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
TTGACATGAATG
Flanking Amino Acid:
HTIVLCHTSERKEVLNLDKL
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
80.2
30.7
Major BPS
67.6
0.44
1.2
75
40
Major PPT
69.8
0.45
1
61.1
44.7
Minor 5ss
34.1
-1.8
2.8
40.8
45.4
Minor BPS
49.3
-0.1
1.8
58.5
43

Associated Gene:

Gene:
CCNG2
Ensembl Gene ID:
ENSAPLG00000011007
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011471
15472610 - 15478732
6123