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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15478044_15478621_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15478044 - 15478621
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CAGTTCTGACTC
Flanking Amino Acid:
GLSLIESTAENENTLCPRQR
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
81
0.7
0.8
76.1
32.5
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
46.5
-0.2
1.7
51.33
40.3

Associated Gene:

Gene:
CCNG2
Ensembl Gene ID:
ENSAPLG00000011007
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011471
15472610 - 15478732
6123