About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15510431_15514060_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15510431 - 15514060
Intron Length:
3630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
GTCACACTCACA
Flanking Amino Acid:
LLDRFLAVVKARPKYLNCIA
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
64.9
0.37
1
67
29.8
Major PPT
77.8
0.63
0.9
72.9
37.4
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
42.1
-0.6
2.2
55
43.1

Associated Gene:

Gene:
CCNI
Ensembl Gene ID:
ENSAPLG00000010886
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011351
15503009 - 15516285
13277