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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15514136_15514310_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15514136 - 15514310
Intron Length:
175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGGCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
CTTTTCTTCTTT
Flanking Amino Acid:
LAAKTIEEDERIPVLKVLAR
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
87.9
29.3
Major BPS
76.8
0.67
1
66
40.9
Major PPT
82.2
0.73
0.9
76.8
37.3
Minor 5ss
55.9
0.2
2.5
76
39.7
Minor BPS
43.2
-0.4
3.6
74.56
43.3

Associated Gene:

Gene:
CCNI
Ensembl Gene ID:
ENSAPLG00000010886
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011351
15503009 - 15516285
13277