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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15533456_15533647_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15533456 - 15533647
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCGGA
5'SS Class:
major
3'SS Sequence:
AATTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATGATCTTAATT
Flanking Amino Acid:
QQTKKDKDKKKRVPSNFVEV
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
66.1
40.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
85.8
0.8
0.8
77.7
40.7
Minor 5ss
37.4
-1.4
3.4
46.6
43.3
Minor BPS
70.2
0.71
1.2
78.58
37.9

Associated Gene:

Gene:
SEPTIN11
Ensembl Gene ID:
ENSAPLG00000010395
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025307
15532425 - 15542299
9875