Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15605980_15609674_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15605980 - 15609674

Intron Length:

3695

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATTCC

5'SS Class:

strong_major

3'SS Sequence:

TCCCTTCTGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATAAC

U12 Branch Point Sequence:

TCCCTTCTGACA

Flanking Amino Acid:

EELLDINEKKAELIGSLTHK

Intron Amino Acid Position:

1722

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

78.2

30.3

Major BPS

70.1

0.5

70.3

31.9

Major PPT

74.9

0.56

0.9

71.4

33.1

Minor 5ss

40.8

-1

2.8

53.7

43.5

Minor BPS

47.1

-0.2

1.6

55.44

37.8

Associated Gene:

Gene:

SHROOM3

Ensembl Gene ID:

ENSAPLG00000010141

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031169

15604741 - 15705611

100871

ENSAPLT00000010555

15604741 - 15675533

70793