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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15609826_15610635_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
15609826 - 15610635
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGCACT
5'SS Class:
major
3'SS Sequence:
CACTGTGGTGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTCTCTTCACT
Flanking Amino Acid:
KSIRTAADDNTREEKEAPVT
Intron Amino Acid Position:
1671

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.3
75.3
40.8
Major BPS
77.5
0.68
1
79.6
33
Major PPT
59.4
0.21
1
53.4
41.2
Minor 5ss
43.4
-0.7
2.8
58.5
39.1
Minor BPS
70.4
0.72
1.7
88.99
35.6

Associated Gene:

Gene:
SHROOM3
Ensembl Gene ID:
ENSAPLG00000010141
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031169
15604741 - 15705611
100871
ENSAPLT00000010555
15604741 - 15675533
70793