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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15613122_15616479_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15613122 - 15616479
Intron Length:
3358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTAATCTTAAAG
Flanking Amino Acid:
DPFYVISAGARSFSKKERSH
Intron Amino Acid Position:
1199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.5
32.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
87.7
0.85
0.7
84.2
30.9
Minor 5ss
34.9
-1.7
3.5
48.5
47.7
Minor BPS
63.4
0.28
1.5
66.29
40.9

Associated Gene:

Gene:
SHROOM3
Ensembl Gene ID:
ENSAPLG00000010141
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010555
15604741 - 15675533
70793
ENSAPLT00000031169
15604741 - 15705611
100871