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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15622781_15625451_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15622781 - 15625451
Intron Length:
2671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
CGCTCTTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
TCTCTCTTCTCT
Flanking Amino Acid:
GIPWPQSYHSSSSTSDLSGY
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
73.2
0.52
0.8
64.7
36.5
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
42
-0.5
3.5
72.48
44.6

Associated Gene:

Gene:
SHROOM3
Ensembl Gene ID:
ENSAPLG00000010141
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031169
15604741 - 15705611
100871
ENSAPLT00000010555
15604741 - 15675533
70793