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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15625584_15634357_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15625584 - 15634357
Intron Length:
8774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TCTGCTTTTACC
Flanking Amino Acid:
SGGVKLRLKTRRSETPGRPH
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.8
75
35.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
71.7
0.49
0.9
65.8
40.1
Minor 5ss
28.6
-2.5
3.4
37.5
47.2
Minor BPS
60.2
0.3
1.8
69.99
42.1

Associated Gene:

Gene:
SHROOM3
Ensembl Gene ID:
ENSAPLG00000010141
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031169
15604741 - 15705611
100871
ENSAPLT00000010555
15604741 - 15675533
70793