About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15634487_15705353_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
15634487 - 15705353
Intron Length:
70867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCAAG
5'SS Class:
major
3'SS Sequence:
TTTCTTTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTTCTTTTGACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68.8
43.8
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
85.5
0.8
0.9
83.5
31.6
Minor 5ss
37.3
-1.4
3.1
47.3
48.3
Minor BPS
71.5
0.67
1.1
79.17
30

Associated Gene:

Gene:
SHROOM3
Ensembl Gene ID:
ENSAPLG00000010141
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031169
15604741 - 15705611
100871