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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15785390_15785509_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15785390 - 15785509
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGAGC
5'SS Class:
major
3'SS Sequence:
TTGTTGTGCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCTTTTTAATT
Flanking Amino Acid:
RGRGAKRRAQRIFWGAVSKC
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.3
59.9
42
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
69.8
0.45
1
69.4
41.7
Minor 5ss
36.8
-1.5
3.4
51.6
45.2
Minor BPS
78
0.96
1
86.64
33.8

Associated Gene:

Gene:
STBD1
Ensembl Gene ID:
ENSAPLG00000020939
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042686
15784536 - 15785962
1427