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Intron Name: Anas_platyrhynchos_platyrhynchos_4_15809364_15813115_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15809364 - 15813115

Intron Length:

3752

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAGGACCA

5'SS Class:

major

3'SS Sequence:

TCTCGTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTTAA

U12 Branch Point Sequence:

ACTTGCTTACAG

Flanking Amino Acid:

LVEEKGPYTYREYRPRVHVQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.3

0.48

1.1

56.5

42.6

Major BPS

72.1

0.55

1.1

63.7

43.9

Major PPT

86.2

0.81

0.8

83.9

31.1

Minor 5ss

31.3

-2.1

3.3

40.7

45.1

Minor BPS

46.8

-0.3

2.2

54.57

46.4

Associated Gene:

Gene:

SCARB2

Ensembl Gene ID:

ENSAPLG00000009561

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010020

15802862 - 15821683

18822

ENSAPLT00000024405

15801973 - 15823577

21605