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Intron Name: Anas_platyrhynchos_platyrhynchos_4_15813264_15814745_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15813264 - 15814745

Intron Length:

1482

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

AATCCCCTGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCAAT

U12 Branch Point Sequence:

TTTTCCCTGATT

Flanking Amino Acid:

LIRTINVPAVTAMEWTRATS

Intron Amino Acid Position:

142

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

0.8

79.3

29.7

Major BPS

71.8

0.54

1.2

32.5

Major PPT

64.6

0.33

58.9

37.2

Minor 5ss

37.5

-1.4

2.9

47.5

42.3

Minor BPS

73.9

0.83

1.6

92.15

30.1

Associated Gene:

Gene:

SCARB2

Ensembl Gene ID:

ENSAPLG00000009561

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024405

15801973 - 15823577

21605

ENSAPLT00000010020

15802862 - 15821683

18822