Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15816418_15817420_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15816418 - 15817420

Intron Length:

1003

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAAAA

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACAAAT

U12 Branch Point Sequence:

ACTAACAAATCT

Flanking Amino Acid:

NIYIFSSDFCRSFYLVYDSS

Intron Amino Acid Position:

275

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.9

1.01

0.7

23.7

Major BPS

60.7

0.27

65.3

28.1

Major PPT

88.6

0.87

0.7

24.1

Minor 5ss

32.8

-2

2.9

39.7

45.8

Minor BPS

39.3

-0.7

2.1

57.09

44.9

Associated Gene:

Gene:

SCARB2

Ensembl Gene ID:

ENSAPLG00000009561

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024405

15801973 - 15823577

21605

ENSAPLT00000010020

15802862 - 15821683

18822