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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15817600_15818155_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15817600 - 15818155
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCACATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCTTAAATG
Flanking Amino Acid:
GVLNVSICKQGAPIFLSAPH
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
80.1
28.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80
0.67
0.9
70.7
39.5
Minor 5ss
46.6
-0.3
2.5
60.6
44.5
Minor BPS
68.4
0.44
1.7
74.65
38.4

Associated Gene:

Gene:
SCARB2
Ensembl Gene ID:
ENSAPLG00000009561
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024405
15801973 - 15823577
21605
ENSAPLT00000010020
15802862 - 15821683
18822