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Intron Name: Anas_platyrhynchos_platyrhynchos_4_15819464_15820623_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15819464 - 15820623

Intron Length:

1160

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTAAGTGCT

5'SS Class:

major

3'SS Sequence:

TTTTTTTACACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TGTTTTTTTACA

Flanking Amino Acid:

NVHVRKLPEFFETGNIRTLI

Intron Amino Acid Position:

399

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.7

0.63

73.6

35.1

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

87.2

0.84

0.8

84.3

29.6

Minor 5ss

37.9

-1.4

3.3

56.6

41.9

Minor BPS

65.3

0.48

1.6

75.28

35.7

Associated Gene:

Gene:

SCARB2

Ensembl Gene ID:

ENSAPLG00000009561

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024405

15801973 - 15823577

21605

ENSAPLT00000010020

15802862 - 15821683

18822